Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:125869478..125872586-chr8:125926416..125930050,3	MCF-7	breast:
2	chr8:125877381..125879616-chr8:125926000..125927902,2	MCF-7	breast:
3	chr8:125919411..125921698-chr8:125926502..125928708,2	MCF-7	breast:
4	chr8:125903181..125907429-chr8:125925929..125929993,4	K562	blood:
5	chr8:125864922..125866655-chr8:125925294..125927990,2	MCF-7	breast:
6	chr8:125922807..125927741-chr8:125929705..125933401,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255080	Chromatin interaction
ENSG00000250428	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10956221	0.81[AMR][1000 genomes]
rs11987831	0.85[AMR][1000 genomes]
rs12681718	0.82[AMR][1000 genomes]
rs13252227	0.87[AMR][1000 genomes]
rs28810782	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4871561	0.82[AMR][1000 genomes]
rs4871566	0.84[AMR][1000 genomes]
rs6470295	0.85[AMR][1000 genomes]
rs6470297	0.85[AMR][1000 genomes]
rs6470299	0.84[AMR][1000 genomes]
rs6470301	0.84[AMR][1000 genomes]
rs6470304	0.81[AMR][1000 genomes]
rs6470325	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7016723	0.84[AMR][1000 genomes]
rs7461228	0.87[AMR][1000 genomes]
rs7463183	0.84[AMR][1000 genomes]
rs7464601	0.87[AMR][1000 genomes]
rs7464910	0.81[AMR][1000 genomes]
rs7813655	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7820918	0.81[AMR][1000 genomes]
rs7833872	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7845589	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125925600-125931200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr8:125926000-125927000	Enhancers	Left Ventricle	heart
3	chr8:125926200-125929600	Weak transcription	HepG2	liver

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