Variant report

Variant	rs7820918
Chromosome Location	chr8:125894461-125894462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125890513..125892129-chr8:125892200..125894827,2	MCF-7	breast:
2	chr8:125893623..125896589-chr8:125899803..125902568,2	MCF-7	breast:
3	chr8:125893804..125895346-chr8:125896613..125898917,2	MCF-7	breast:
4	chr8:125891889..125894813-chr8:125896183..125898744,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10097995	1.00[EUR][1000 genomes]
rs10956221	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11987831	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12681718	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13252227	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1365690	1.00[EUR][1000 genomes]
rs16900168	1.00[EUR][1000 genomes]
rs4870929	0.86[ASN][1000 genomes]
rs4870930	0.86[ASN][1000 genomes]
rs4871557	0.86[ASN][1000 genomes]
rs4871559	0.86[ASN][1000 genomes]
rs4871561	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4871566	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6470291	0.86[ASN][1000 genomes]
rs6470293	0.86[ASN][1000 genomes]
rs6470295	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6470297	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6470299	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6470301	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6470304	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6470310	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6470312	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6470315	0.87[AMR][1000 genomes]
rs6470316	0.84[AMR][1000 genomes]
rs6470317	0.82[AMR][1000 genomes]
rs6470325	0.83[AMR][1000 genomes]
rs7004579	1.00[EUR][1000 genomes]
rs7011950	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7016723	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7387254	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7388465	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7459652	0.86[ASN][1000 genomes]
rs7461228	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7463183	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7463584	0.81[AMR][1000 genomes]
rs7463657	0.86[ASN][1000 genomes]
rs7464601	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7464910	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7819873	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7820706	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7834577	0.82[AMR][1000 genomes]
rs7845589	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9987227	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv3404810	chr8:125889954-125895701	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125887200-125900200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:125894000-125895200	Weak transcription	HSMMtube	muscle
3	chr8:125894200-125895200	Weak transcription	HSMM	muscle
4	chr8:125894200-125900200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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