Variant report

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125861351..125863814-chr8:125873373..125876664,3	K562	blood:
2	chr8:125861710..125864506-chr8:125866256..125868160,3	K562	blood:
3	chr16:68268392..68270651-chr8:125859667..125862463,2	MCF-7	breast:
4	chr8:125736316..125742243-chr8:125861977..125870763,24	MCF-7	breast:
5	chr8:125624289..125626710-chr8:125861168..125862907,2	MCF-7	breast:
6	chr8:125861710..125864506-chr8:125866256..125867953,3	K562	blood:
7	chr8:125861812..125863734-chr8:126007944..126010716,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF572-1	chr8:125861987-125862459	ENSG00000249816

No data

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10956221	0.89[ASN][1000 genomes]
rs11987831	0.89[ASN][1000 genomes]
rs12681718	0.91[ASN][1000 genomes]
rs13252227	0.86[ASN][1000 genomes]
rs13269995	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28812857	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4870929	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4870930	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4871557	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4871559	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4871561	0.91[ASN][1000 genomes]
rs6470291	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6470293	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6470295	0.91[ASN][1000 genomes]
rs6470297	0.91[ASN][1000 genomes]
rs6470299	0.89[ASN][1000 genomes]
rs6470301	0.86[ASN][1000 genomes]
rs6470304	0.86[ASN][1000 genomes]
rs6990879	0.84[AFR][1000 genomes]
rs7016723	0.86[ASN][1000 genomes]
rs7459652	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7461228	0.86[ASN][1000 genomes]
rs7463183	0.89[ASN][1000 genomes]
rs7464187	0.84[AFR][1000 genomes]
rs7464601	0.86[ASN][1000 genomes]
rs7820918	0.86[ASN][1000 genomes]
rs7845589	0.91[ASN][1000 genomes]
rs9987227	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125860400-125866000	Weak transcription	Esophagus	oesophagus
2	chr8:125861000-125863200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:125861000-125865400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:125861000-125865600	Weak transcription	Right Ventricle	heart
5	chr8:125861400-125863600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:125861400-125863600	Weak transcription	HepG2	liver
7	chr8:125861400-125866000	Weak transcription	Pancreas	Pancrea
8	chr8:125861400-125869000	Weak transcription	Ovary	ovary
9	chr8:125861800-125863000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:125862000-125862800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:125862000-125865600	Weak transcription	Fetal Heart	heart
12	chr8:125862200-125863400	Weak transcription	Left Ventricle	heart
13	chr8:125862200-125863400	Weak transcription	K562	blood
14	chr8:125862200-125866000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:125862200-125867200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:125862200-125868000	Weak transcription	HMEC	breast

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