Variant report

Variant	rs7464601
Chromosome Location	chr8:125889495-125889496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125878085..125882426-chr8:125889275..125893034,5	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10956221	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11987831	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12681718	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13252227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4870929	0.86[ASN][1000 genomes]
rs4870930	0.86[ASN][1000 genomes]
rs4871557	0.86[ASN][1000 genomes]
rs4871559	0.86[ASN][1000 genomes]
rs4871561	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4871566	0.98[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6470291	0.86[ASN][1000 genomes]
rs6470293	0.86[ASN][1000 genomes]
rs6470295	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6470297	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6470299	0.98[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6470301	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6470304	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6470310	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6470312	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6470315	0.89[AMR][1000 genomes]
rs6470316	0.90[AMR][1000 genomes]
rs6470317	0.88[AMR][1000 genomes]
rs6470318	0.81[AMR][1000 genomes]
rs6470325	0.89[AMR][1000 genomes]
rs7011950	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7016723	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7387254	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7388465	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7459652	0.86[ASN][1000 genomes]
rs7461228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7462073	0.85[AFR][1000 genomes]
rs7463183	0.98[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7463584	0.87[AMR][1000 genomes]
rs7463657	0.86[ASN][1000 genomes]
rs7464910	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7819873	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7820706	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7820918	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7834577	0.88[AMR][1000 genomes]
rs7845589	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9987227	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125887200-125900200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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