Variant report

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125642013..125645236-chr8:125863862..125867426,3	MCF-7	breast:
2	chr8:125858857..125860537-chr8:125866722..125869065,2	K562	blood:
3	chr8:125864651..125867984-chr8:125934838..125937619,3	MCF-7	breast:
4	chr4:141635333..141638070-chr8:125864538..125866745,2	MCF-7	breast:
5	chr8:125865686..125867784-chr8:125906339..125908713,3	MCF-7	breast:
6	chr8:125866488..125871186-chr8:126008597..126013344,9	MCF-7	breast:
7	chr8:125605123..125607316-chr8:125865948..125867968,2	MCF-7	breast:
8	chr8:125736316..125742243-chr8:125861977..125870763,24	MCF-7	breast:
9	chr8:125568548..125570279-chr8:125865531..125868278,2	MCF-7	breast:
10	chr8:125550224..125552567-chr8:125866024..125869160,3	MCF-7	breast:
11	chr8:125538432..125540496-chr8:125866571..125869379,2	MCF-7	breast:
12	chr8:125861710..125864506-chr8:125866256..125867953,3	K562	blood:
13	chr8:125861710..125864506-chr8:125866256..125868160,3	K562	blood:
14	chr8:125551556..125553845-chr8:125864809..125867694,2	MCF-7	breast:
15	chr8:125734815..125743876-chr8:125864194..125871100,21	MCF-7	breast:
16	chr8:125865723..125867850-chr8:125937365..125941183,3	MCF-7	breast:
17	chr8:125866182..125867847-chr8:126013672..126016606,2	MCF-7	breast:
18	chr8:125865612..125869079-chr8:125880242..125881990,3	K562	blood:
19	chr8:125793631..125795997-chr8:125865108..125867382,3	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10956221	0.89[ASN][1000 genomes]
rs11987831	0.89[ASN][1000 genomes]
rs12681718	0.91[ASN][1000 genomes]
rs13252227	0.86[ASN][1000 genomes]
rs13269995	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28812857	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs4870929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4870930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4871557	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4871559	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4871561	0.91[ASN][1000 genomes]
rs6470293	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6470295	0.91[ASN][1000 genomes]
rs6470297	0.91[ASN][1000 genomes]
rs6470299	0.89[ASN][1000 genomes]
rs6470301	0.86[ASN][1000 genomes]
rs6470304	0.86[ASN][1000 genomes]
rs6990879	0.84[AFR][1000 genomes]
rs7016723	0.86[ASN][1000 genomes]
rs7459652	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7461228	0.86[ASN][1000 genomes]
rs7463183	0.89[ASN][1000 genomes]
rs7463657	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7464187	0.84[AFR][1000 genomes]
rs7464601	0.86[ASN][1000 genomes]
rs7820918	0.86[ASN][1000 genomes]
rs7845589	0.91[ASN][1000 genomes]
rs9987227	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125861400-125869000	Weak transcription	Ovary	ovary
2	chr8:125862200-125867200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:125862200-125868000	Weak transcription	HMEC	breast
4	chr8:125863000-125868600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:125863800-125868600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:125863800-125869000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:125865600-125866800	Enhancers	Fetal Heart	heart
8	chr8:125865600-125867200	Enhancers	HepG2	liver
9	chr8:125866200-125869000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:125866200-125869400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:125866400-125867400	Weak transcription	Lung	lung
12	chr8:125866400-125869000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:125866400-125869000	Weak transcription	Left Ventricle	heart
14	chr8:125866400-125869200	Weak transcription	Esophagus	oesophagus
15	chr8:125866400-125869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:125866600-125869000	Weak transcription	K562	blood

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