Variant report

Variant	rs7476924
Chromosome Location	chr10:25834125-25834126
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25833305..25835524-chr10:25841251..25843498,2	K562	blood:
2	chr10:25833305..25835212-chr10:25841456..25843498,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10082439	0.82[AMR][1000 genomes]
rs10082450	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10218916	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10218998	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10741094	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10764558	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10828818	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11014610	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1335199	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1335200	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1414042	0.81[AMR][1000 genomes]
rs1414043	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1414052	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1556665	0.84[AMR][1000 genomes]
rs1855671	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1855673	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1981117	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4747530	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4749046	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4749047	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6482494	0.83[AMR][1000 genomes]
rs7100629	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7901206	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7902319	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7903204	0.83[AMR][1000 genomes]
rs7913399	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7919640	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9919420	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25820000-25836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:25826000-25834600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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