Variant report

Variant	rs1855673
Chromosome Location	chr10:25833758-25833759
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10082439	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10082450	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10218916	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10218998	0.80[EUR][1000 genomes]
rs10764558	0.81[AMR][1000 genomes]
rs1556665	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1855671	0.82[AMR][1000 genomes]
rs7090998	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7091908	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7100629	0.80[ASN][1000 genomes]
rs7476924	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7901206	0.83[ASN][1000 genomes]
rs7902319	0.88[ASN][1000 genomes]
rs9919420	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25820000-25836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:25826000-25834600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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