Variant report

Variant	rs7090998
Chromosome Location	chr10:25825585-25825586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25820653..25822435-chr10:25825054..25828032,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10082439	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10082450	0.81[AMR][1000 genomes]
rs10218998	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1029179	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10508700	0.85[JPT][hapmap]
rs10741094	0.88[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10764558	0.94[CHB][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10828818	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014610	0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12221280	0.81[EUR][1000 genomes]
rs1335199	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1335200	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1414041	0.88[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs1414042	0.88[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes]
rs1414043	0.88[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1414052	0.88[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1536836	0.86[JPT][hapmap]
rs1536837	0.85[JPT][hapmap]
rs1556665	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1855671	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1855673	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1981117	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4550137	0.85[ASN][1000 genomes]
rs4747524	0.85[JPT][hapmap]
rs4747530	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4749046	0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4749047	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6482488	0.85[JPT][hapmap]
rs6482493	0.88[CHB][hapmap]
rs6482494	0.94[CHB][hapmap];0.80[JPT][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7068743	0.85[JPT][hapmap]
rs7072700	0.84[JPT][hapmap]
rs7082952	0.86[JPT][hapmap]
rs7091908	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7100629	0.88[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7478285	0.84[JPT][hapmap]
rs7901206	0.85[AMR][1000 genomes]
rs7902319	0.85[AMR][1000 genomes]
rs7903204	0.87[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes]
rs7903336	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7913399	0.88[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7919640	0.88[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7922752	0.94[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs943985	0.85[JPT][hapmap]
rs9919420	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25820000-25836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:25825000-25826000	Enhancers	Cortex derived primary cultured neurospheres	brain

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