Variant report

Variant	rs1556665
Chromosome Location	chr10:25826486-25826487
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25820653..25822435-chr10:25825054..25828032,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10082439	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10082450	0.87[AMR][1000 genomes]
rs10218916	0.81[ASN][1000 genomes]
rs10218998	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1029179	0.96[ASN][1000 genomes]
rs10741094	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10764558	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10828818	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11014610	0.83[AMR][1000 genomes]
rs1335199	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1335200	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1414041	0.84[ASN][1000 genomes]
rs1414042	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1414043	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1414052	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1855671	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1855673	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1981117	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4550137	0.89[ASN][1000 genomes]
rs4747530	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4749046	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4749047	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6482493	0.84[ASN][1000 genomes]
rs6482494	0.83[AMR][1000 genomes]
rs7090998	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7091908	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7100629	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7476924	0.84[AMR][1000 genomes]
rs7901206	0.81[AMR][1000 genomes]
rs7902319	0.81[AMR][1000 genomes]
rs7903204	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7903336	0.84[ASN][1000 genomes]
rs7913399	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7919640	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9919420	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv947772	chr10:25825612-25827973	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25820000-25836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:25826000-25834600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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