Variant report

Variant	rs7488222
Chromosome Location	chr12:7652044-7652045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11054197	0.90[CHB][hapmap]
rs6488340	1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488352	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488382	0.94[AFR][1000 genomes]
rs6488388	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6488394	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7301572	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7953031	0.90[CHB][hapmap]
rs7954492	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557269	chr12:7623724-7691134	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7649800-7652400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:7650000-7654000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:7650000-7654600	Weak transcription	Placenta	Placenta
4	chr12:7650600-7657000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr12:7651000-7652600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr12:7651200-7652400	Weak transcription	Right Atrium	heart
7	chr12:7651400-7652600	Weak transcription	Adipose Nuclei	Adipose
8	chr12:7651600-7653600	Weak transcription	NHEK	skin
9	chr12:7651800-7653400	Weak transcription	Liver	Liver
10	chr12:7651800-7653600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:7651800-7653600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:7651800-7654000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:7651800-7654000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:7652000-7652600	Enhancers	NHLF	lung
15	chr12:7652000-7653600	Weak transcription	Osteobl	bone
16	chr12:7652000-7654200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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