Variant report

Variant	rs7953031
Chromosome Location	chr12:7642785-7642786
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10734844	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10743940	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10772424	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10772425	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10772448	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10772449	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11054197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[ASN][1000 genomes]
rs4883263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6488345	0.87[AMR][1000 genomes]
rs6488359	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6488368	0.82[ASN][1000 genomes]
rs6488383	0.84[ASN][1000 genomes]
rs6488385	0.95[ASN][1000 genomes]
rs7300923	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7485901	0.82[ASN][1000 genomes]
rs7954492	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557269	chr12:7623724-7691134	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7630000-7649400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr12:7630200-7649200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:7638000-7645800	Weak transcription	Lung	lung
4	chr12:7639600-7649400	Weak transcription	Adipose Nuclei	Adipose
5	chr12:7640600-7647800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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