Variant report

Variant	rs6488359
Chromosome Location	chr12:7651924-7651925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10734844	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10743940	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772424	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10772425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772448	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10772449	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11054197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4883263	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488345	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6488368	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6488383	0.84[ASN][1000 genomes]
rs6488385	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7300923	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7485901	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7953031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7954492	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557269	chr12:7623724-7691134	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7649800-7652400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:7650000-7654000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:7650000-7654600	Weak transcription	Placenta	Placenta
4	chr12:7650600-7657000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr12:7651000-7652600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr12:7651200-7652000	Flanking Active TSS	NHDF-Ad	bronchial
7	chr12:7651200-7652400	Weak transcription	Right Atrium	heart
8	chr12:7651400-7652600	Weak transcription	Adipose Nuclei	Adipose
9	chr12:7651600-7652000	Weak transcription	NHLF	lung
10	chr12:7651600-7653600	Weak transcription	NHEK	skin
11	chr12:7651800-7652000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:7651800-7652000	Enhancers	Osteobl	bone
13	chr12:7651800-7653400	Weak transcription	Liver	Liver
14	chr12:7651800-7653600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:7651800-7653600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:7651800-7654000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr12:7651800-7654000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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