Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACSM4-3	chr12:7649137-7650666	NONHSAT026257

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10734844	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10743940	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772424	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10772425	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772448	0.87[ASN][1000 genomes]
rs10772449	0.87[ASN][1000 genomes]
rs11054197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6488345	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6488359	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488368	0.84[ASN][1000 genomes]
rs6488383	0.84[ASN][1000 genomes]
rs6488385	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7300923	0.84[ASN][1000 genomes]
rs7485901	0.82[ASN][1000 genomes]
rs7953031	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7954492	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557269	chr12:7623724-7691134	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7649200-7649800	Genic enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:7649200-7650200	Genic enhancers	Liver	Liver
3	chr12:7649200-7651600	Enhancers	NHEK	skin
4	chr12:7649400-7649600	Flanking Active TSS	Placenta	Placenta
5	chr12:7649400-7649600	Enhancers	Gastric	stomach
6	chr12:7649400-7649800	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr12:7649400-7649800	ZNF genes & repeats	Lung	lung
8	chr12:7649400-7649800	ZNF genes & repeats	Right Atrium	heart
9	chr12:7649400-7650200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:7649400-7650200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr12:7649400-7650200	Genic enhancers	Monocytes-CD14+_RO01746	blood
12	chr12:7649400-7650400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr12:7649400-7650400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr12:7649400-7650400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr12:7649400-7650800	Enhancers	Adipose Nuclei	Adipose
16	chr12:7649400-7651200	Enhancers	NHDF-Ad	bronchial
17	chr12:7649400-7651800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr12:7649400-7651800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr12:7649400-7651800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:7649400-7651800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr12:7649400-7651800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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