Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10734844	0.94[ASN][1000 genomes]
rs10743940	1.00[ASN][1000 genomes]
rs10772424	0.98[ASN][1000 genomes]
rs10772425	1.00[ASN][1000 genomes]
rs10772448	0.87[ASN][1000 genomes]
rs10772449	0.87[ASN][1000 genomes]
rs11054197	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4883263	1.00[ASN][1000 genomes]
rs6488340	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6488352	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6488359	1.00[ASN][1000 genomes]
rs6488368	0.84[ASN][1000 genomes]
rs6488382	0.94[AFR][1000 genomes]
rs6488383	0.84[ASN][1000 genomes]
rs6488385	0.98[ASN][1000 genomes]
rs6488388	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6488394	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7300923	0.84[ASN][1000 genomes]
rs7301572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7485901	0.82[ASN][1000 genomes]
rs7488222	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7953031	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557269	chr12:7623724-7691134	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7650000-7654600	Weak transcription	Placenta	Placenta
2	chr12:7650600-7657000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr12:7652600-7656400	Active TSS	Adipose Nuclei	Adipose
4	chr12:7653200-7656200	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr12:7653600-7654400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
6	chr12:7653800-7655400	Active TSS	Duodenum Mucosa	Duodenum
7	chr12:7653800-7656200	Active TSS	Fetal Muscle Leg	muscle
8	chr12:7654000-7655800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:7654200-7655000	Weak transcription	Left Ventricle	heart
10	chr12:7654200-7655000	Weak transcription	Right Atrium	heart
11	chr12:7654200-7655400	Weak transcription	Liver	Liver

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