Variant report
| Variant | rs7300923 |
|---|---|
| Chromosome Location | chr12:7670883-7670884 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ACSM4-5 | chr12:7670415-7670900 | NONHSAT026259 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10734844 | 0.83[ASN][1000 genomes] |
| rs10743940 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10772424 | 0.82[ASN][1000 genomes] |
| rs10772425 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10772448 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10772449 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11054197 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4883263 | 0.84[ASN][1000 genomes] |
| rs6488359 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6488368 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs6488385 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7485901 | 0.80[AFR][1000 genomes] |
| rs7953031 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7954492 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv557269 | chr12:7623724-7691134 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1041155 | chr12:7655137-7821891 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1045650 | chr12:7655137-7824995 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | esv3405329 | chr12:7656734-7712687 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
