Variant report

Variant	rs749189
Chromosome Location	chr9:85321840-85321841
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11139686	0.84[EUR][1000 genomes]
rs11794369	0.84[EUR][1000 genomes]
rs12336581	0.83[EUR][1000 genomes]
rs749188	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7862317	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85321400-85322000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:85321400-85322200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:85321400-85322600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:85321400-85322600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:85321600-85322000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr9:85321600-85322000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:85321600-85322200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:85321600-85322400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:85321600-85322600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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