Variant report

Variant	rs7862317
Chromosome Location	chr9:85286850-85286851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10512130	0.81[EUR][1000 genomes]
rs11139686	0.99[EUR][1000 genomes]
rs11787619	0.82[EUR][1000 genomes]
rs11794369	0.94[EUR][1000 genomes]
rs12336581	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7028050	0.83[EUR][1000 genomes]
rs73648458	0.82[EUR][1000 genomes]
rs749188	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs749189	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85283400-85288400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:85284000-85288800	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links