Variant report

Variant	rs11787619
Chromosome Location	chr9:85250983-85250984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10512130	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11139686	0.81[EUR][1000 genomes]
rs11790770	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11794369	0.85[EUR][1000 genomes]
rs12336581	0.86[EUR][1000 genomes]
rs1933014	0.81[EUR][1000 genomes]
rs7025163	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7028050	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7028728	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73648458	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7852426	0.88[EUR][1000 genomes]
rs7862317	0.82[EUR][1000 genomes]
rs868394	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85250800-85251200	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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