Variant report

Variant	rs7028728
Chromosome Location	chr9:85209810-85209811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10512130	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11787619	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11790770	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11794369	0.80[EUR][1000 genomes]
rs12336581	0.81[EUR][1000 genomes]
rs1933014	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7025163	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7028050	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7035264	0.93[GIH][hapmap];0.84[EUR][1000 genomes]
rs73648458	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7852426	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs868394	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85199600-85215400	Weak transcription	Pancreas	Pancrea
2	chr9:85204600-85212200	Weak transcription	Fetal Kidney	kidney
3	chr9:85205200-85210000	Weak transcription	HepG2	liver
4	chr9:85208800-85210400	Weak transcription	Fetal Lung	lung
5	chr9:85209000-85210400	Weak transcription	Fetal Stomach	stomach
6	chr9:85209000-85213200	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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