Variant report

Variant	rs10512130
Chromosome Location	chr9:85227767-85227768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11139686	0.82[EUR][1000 genomes]
rs11787619	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11790770	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11794369	0.86[EUR][1000 genomes]
rs12336581	0.85[EUR][1000 genomes]
rs12348281	1.00[ASN][1000 genomes]
rs1933014	0.80[EUR][1000 genomes]
rs7025163	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7028050	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7028728	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7035264	0.87[GIH][hapmap]
rs73648458	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7852426	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862317	0.81[EUR][1000 genomes]
rs868394	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85227000-85227800	Enhancers	Fetal Stomach	stomach
2	chr9:85227200-85227800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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