Variant report

Variant	rs11794369
Chromosome Location	chr9:85295295-85295296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10512130	0.86[EUR][1000 genomes]
rs11139686	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11787619	0.85[EUR][1000 genomes]
rs12336581	0.99[EUR][1000 genomes]
rs7025163	0.80[EUR][1000 genomes]
rs7028050	0.86[EUR][1000 genomes]
rs7028728	0.80[EUR][1000 genomes]
rs73648458	0.85[EUR][1000 genomes]
rs749188	0.82[EUR][1000 genomes]
rs749189	0.84[EUR][1000 genomes]
rs7862317	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85293000-85297400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:85295200-85295800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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