Variant report

Variant	rs73648458
Chromosome Location	chr9:85221676-85221677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10512130	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11139686	0.81[EUR][1000 genomes]
rs11787619	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11790770	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11794369	0.85[EUR][1000 genomes]
rs12336581	0.86[EUR][1000 genomes]
rs1933014	0.81[EUR][1000 genomes]
rs7025163	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7028050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7028728	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7852426	0.88[EUR][1000 genomes]
rs7862317	0.82[EUR][1000 genomes]
rs868394	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85219600-85221800	Enhancers	Liver	Liver
2	chr9:85219600-85221800	Enhancers	Fetal Kidney	kidney
3	chr9:85219600-85222000	Enhancers	Fetal Lung	lung
4	chr9:85220800-85221800	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr9:85220800-85221800	Enhancers	Fetal Muscle Leg	muscle
6	chr9:85220800-85221800	Enhancers	HepG2	liver
7	chr9:85221000-85221800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr9:85221000-85221800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr9:85221200-85221800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:85221200-85221800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:85221200-85227000	Weak transcription	Fetal Stomach	stomach
12	chr9:85221400-85221800	Flanking Active TSS	Colon Smooth Muscle	Colon
13	chr9:85221600-85221800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:85221600-85221800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:85221600-85221800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:85221600-85222000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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