Variant report

Variant	rs7852426
Chromosome Location	chr9:85178729-85178730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10512130	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787619	0.88[EUR][1000 genomes]
rs11790770	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12348281	1.00[ASN][1000 genomes]
rs1933014	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7025163	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7028050	0.89[EUR][1000 genomes]
rs7028728	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7035264	0.83[EUR][1000 genomes]
rs73648458	0.88[EUR][1000 genomes]
rs868394	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3341772	chr9:85176432-85180630	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85175000-85180200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:85176000-85180200	Weak transcription	Liver	Liver
3	chr9:85178400-85179000	ZNF genes & repeats	Fetal Kidney	kidney
4	chr9:85178600-85178800	Active TSS	Fetal Lung	lung
5	chr9:85178600-85178800	ZNF genes & repeats	Pancreas	Pancrea
6	chr9:85178600-85178800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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