Variant report

Variant	rs11790770
Chromosome Location	chr9:85197096-85197097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10512130	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11787619	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1933014	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7025163	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7028050	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7028728	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7035264	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73648458	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7852426	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs868394	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85195200-85198200	Enhancers	Fetal Intestine Small	intestine
2	chr9:85195200-85205000	Enhancers	Fetal Intestine Large	intestine
3	chr9:85195600-85200000	Enhancers	Liver	Liver
4	chr9:85195600-85205200	Enhancers	HepG2	liver
5	chr9:85196400-85197400	Weak transcription	Stomach Mucosa	stomach
6	chr9:85196600-85197200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:85197000-85197200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:85197000-85197200	Enhancers	Lung	lung
9	chr9:85197000-85197400	Enhancers	Pancreas	Pancrea
10	chr9:85197000-85197600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr9:85197000-85197600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:85197000-85197600	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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