Variant report

Variant	rs7504201
Chromosome Location	chr18:45499983-45499984
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45456840..45458712-chr18:45498629..45500874,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175387	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11660291	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11660888	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11661805	0.87[AMR][1000 genomes]
rs12454831	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12456505	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12458978	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12959163	0.80[AMR][1000 genomes]
rs12971176	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13381433	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17885999	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1942159	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28461482	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28679354	0.80[AMR][1000 genomes]
rs34380210	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs36033209	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61022371	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61474022	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62087556	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62087557	0.85[AMR][1000 genomes]
rs7504245	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7504740	0.93[ASN][1000 genomes]
rs9948382	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9950547	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9967472	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45495400-45501600	Weak transcription	Placenta	Placenta
2	chr18:45498000-45500400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr18:45498000-45502200	Weak transcription	Hela-S3	cervix
4	chr18:45498000-45502800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:45498800-45500000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr18:45498800-45500000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr18:45498800-45500000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr18:45498800-45500000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr18:45498800-45500200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr18:45498800-45502600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr18:45498800-45502600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr18:45499000-45500000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr18:45499000-45500200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr18:45499000-45500400	Enhancers	Ovary	ovary
15	chr18:45499000-45503400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr18:45499200-45500000	Enhancers	Fetal Brain Female	brain
17	chr18:45499200-45500200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr18:45499600-45500000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr18:45499600-45500000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr18:45499600-45500400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr18:45499800-45500200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links