Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11660291	0.88[ASN][1000 genomes]
rs11661805	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12454831	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12456505	0.89[ASN][1000 genomes]
rs12458978	0.89[ASN][1000 genomes]
rs12959163	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12971176	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13381433	0.81[AMR][1000 genomes]
rs17885999	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28679354	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34380210	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36033209	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55670531	0.89[ASN][1000 genomes]
rs61022371	0.82[AMR][1000 genomes]
rs62087556	0.82[AMR][1000 genomes]
rs62087557	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7236676	0.83[ASN][1000 genomes]
rs7504201	0.80[AMR][1000 genomes]
rs7504245	0.82[AMR][1000 genomes]
rs9948382	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9950547	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45509200-45513000	Weak transcription	HSMM	muscle
2	chr18:45509200-45514800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr18:45510400-45523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr18:45510600-45522000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr18:45510800-45515400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:45510800-45515600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr18:45511000-45513400	Weak transcription	Fetal Brain Male	brain
8	chr18:45511000-45515600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr18:45511200-45514000	Enhancers	Primary B cells from cord blood	blood
10	chr18:45511200-45515600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr18:45511600-45513000	Weak transcription	Hela-S3	cervix
12	chr18:45511800-45513600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr18:45511800-45515600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr18:45512000-45513000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr18:45512200-45513000	Weak transcription	Primary B cells from peripheral blood	blood

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