Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11660291	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11661805	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12454831	1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs12456505	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12458978	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12971176	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13381433	0.81[AMR][1000 genomes]
rs17885999	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28679354	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34380210	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36033209	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55670531	0.87[ASN][1000 genomes]
rs61022371	0.82[AMR][1000 genomes]
rs62087556	0.82[AMR][1000 genomes]
rs62087557	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7236676	0.82[ASN][1000 genomes]
rs7504201	1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs7504245	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs8087158	0.85[CEU][hapmap]
rs9948382	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9950547	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9967472	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45509200-45514800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr18:45510400-45523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr18:45510600-45522000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:45510800-45515400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr18:45510800-45515600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr18:45511000-45515600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr18:45511200-45514000	Enhancers	Primary B cells from cord blood	blood
8	chr18:45511200-45515600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr18:45511800-45513600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr18:45511800-45515600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr18:45513000-45513600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr18:45513000-45513800	Enhancers	Fetal Muscle Leg	muscle
13	chr18:45513000-45513800	Enhancers	HSMM	muscle
14	chr18:45513000-45514000	Enhancers	Primary B cells from peripheral blood	blood
15	chr18:45513000-45515000	Enhancers	Hela-S3	cervix
16	chr18:45513200-45514000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr18:45513200-45514000	Enhancers	Fetal Kidney	kidney
18	chr18:45513200-45514000	Enhancers	HSMMtube	muscle
19	chr18:45513400-45514200	Enhancers	Fetal Brain Male	brain
20	chr18:45513400-45514400	Enhancers	A549	lung

Quick Search: