Variant report

Variant	rs55670531
Chromosome Location	chr18:45516987-45516988
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11660291	0.95[ASN][1000 genomes]
rs11661805	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12454831	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12456505	0.96[ASN][1000 genomes]
rs12458978	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12959163	0.87[ASN][1000 genomes]
rs12971176	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17885999	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28679354	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34380210	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs36033209	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61022371	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62087556	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62087557	0.85[ASN][1000 genomes]
rs7236676	0.92[ASN][1000 genomes]
rs7504245	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9948382	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9950547	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9967472	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45510400-45523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr18:45510600-45522000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:45514000-45521800	Weak transcription	HSMMtube	muscle
4	chr18:45514200-45518800	Weak transcription	Fetal Brain Male	brain
5	chr18:45514600-45520000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr18:45515600-45518200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr18:45516000-45523800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr18:45516200-45517600	Weak transcription	Fetal Muscle Leg	muscle
9	chr18:45516200-45519200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:45516200-45519400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr18:45516200-45520000	Weak transcription	Hela-S3	cervix
12	chr18:45516200-45520600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr18:45516200-45527600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr18:45516400-45519800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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