Variant report

Variant	rs7236676
Chromosome Location	chr18:45526835-45526836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11660291	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11661805	0.89[ASN][1000 genomes]
rs12456505	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12458978	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12959163	0.82[ASN][1000 genomes]
rs12971176	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17885999	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs28679354	0.97[ASN][1000 genomes]
rs34380210	0.90[ASN][1000 genomes]
rs36033209	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs55670531	0.92[ASN][1000 genomes]
rs60374329	0.84[AFR][1000 genomes]
rs9948382	0.85[ASN][1000 genomes]
rs9950547	0.90[ASN][1000 genomes]
rs9967472	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45516200-45527600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:45517600-45529000	Weak transcription	Right Ventricle	heart
3	chr18:45520400-45529600	Weak transcription	Stomach Mucosa	stomach
4	chr18:45524200-45529000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:45525200-45527200	Enhancers	Primary hematopoietic stem cells	blood
6	chr18:45525200-45527400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr18:45525200-45531200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr18:45525400-45527400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr18:45525600-45527200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr18:45526200-45527400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr18:45526200-45529000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr18:45526200-45529200	Enhancers	Hela-S3	cervix
13	chr18:45526600-45529200	Weak transcription	Fetal Thymus	thymus
14	chr18:45526800-45529000	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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