Variant report

Variant	rs750485
Chromosome Location	chr15:53617029-53617030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11070976	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11856300	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11856514	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11856604	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12439627	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12592658	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12900646	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12900725	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12901476	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12904851	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12907341	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12914787	0.94[ASN][1000 genomes]
rs1386170	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1486556	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1486557	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1486559	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1501071	0.90[ASN][1000 genomes]
rs1552416	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17546789	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2134002	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4776131	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4776132	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4776133	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55968066	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7173165	0.90[ASN][1000 genomes]
rs750486	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs751175	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53605400-53617400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:53614600-53618200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:53615400-53617600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:53615800-53617400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:53616000-53617400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:53616000-53617800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:53616400-53617400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:53616400-53617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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