Variant report

Variant	rs1486559
Chromosome Location	chr15:53619939-53619940
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR72-4	chr15:53618374-53622121	ucscGeneNc_uc002ade_1

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10152228	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10152522	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10152553	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1027010	0.82[EUR][1000 genomes]
rs11070976	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11856300	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11856514	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11856604	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11856856	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12439589	0.83[EUR][1000 genomes]
rs12439627	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12442789	0.83[EUR][1000 genomes]
rs12592658	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12900646	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12900725	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12901476	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12904851	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12904974	0.83[AFR][1000 genomes]
rs12907341	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12911558	0.83[EUR][1000 genomes]
rs12914787	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1386170	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1466597	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1466598	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1466599	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1466600	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1466601	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1486556	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1486557	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1486558	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1486560	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1486561	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1486562	0.85[EUR][1000 genomes]
rs1486563	0.85[EUR][1000 genomes]
rs1501071	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1552415	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1552416	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17546789	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17546957	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2036356	0.81[EUR][1000 genomes]
rs2134002	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4143784	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4143785	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4776131	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4776132	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4776133	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55968066	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7162663	0.81[EUR][1000 genomes]
rs7173165	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs750485	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs750486	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs751175	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8037429	0.82[EUR][1000 genomes]
rs972045	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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