Variant report

Variant	rs2036356
Chromosome Location	chr15:53652893-53652894
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11070976	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11856300	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11856514	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11856604	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12439627	0.84[EUR][1000 genomes]
rs12592658	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12900646	0.83[EUR][1000 genomes]
rs12900725	0.83[EUR][1000 genomes]
rs12901476	0.83[EUR][1000 genomes]
rs12904851	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12907341	0.81[EUR][1000 genomes]
rs1386170	0.83[EUR][1000 genomes]
rs1486556	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1486557	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1486559	0.81[EUR][1000 genomes]
rs1501071	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1552416	0.83[EUR][1000 genomes]
rs17546789	0.83[EUR][1000 genomes]
rs2134002	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs272779	0.85[EUR][1000 genomes]
rs272780	0.85[EUR][1000 genomes]
rs272782	0.85[EUR][1000 genomes]
rs272783	0.85[EUR][1000 genomes]
rs272785	0.81[EUR][1000 genomes]
rs272786	0.83[EUR][1000 genomes]
rs272787	0.82[EUR][1000 genomes]
rs4776131	0.83[EUR][1000 genomes]
rs4776132	0.83[EUR][1000 genomes]
rs4776133	0.80[EUR][1000 genomes]
rs55968066	0.82[EUR][1000 genomes]
rs750486	0.83[EUR][1000 genomes]
rs751175	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53652200-53654800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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