Variant report

Variant	rs272782
Chromosome Location	chr15:53652385-53652386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53646817..53649529-chr15:53650079..53652645,2	K562	blood:
2	chr1:226296765..226299191-chr15:53650573..53653066,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10152228	0.87[EUR][1000 genomes]
rs10152522	0.87[EUR][1000 genomes]
rs10152553	0.87[EUR][1000 genomes]
rs1027010	0.86[EUR][1000 genomes]
rs11070975	0.80[EUR][1000 genomes]
rs11856856	0.87[EUR][1000 genomes]
rs12148777	0.80[EUR][1000 genomes]
rs12439589	0.87[EUR][1000 genomes]
rs12442789	0.87[EUR][1000 genomes]
rs12904974	0.83[EUR][1000 genomes]
rs12911558	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1466597	0.87[EUR][1000 genomes]
rs1466598	0.87[EUR][1000 genomes]
rs1466599	0.87[EUR][1000 genomes]
rs1466600	0.87[EUR][1000 genomes]
rs1466601	0.87[EUR][1000 genomes]
rs1486558	0.84[EUR][1000 genomes]
rs1486560	0.84[EUR][1000 genomes]
rs1486561	0.87[EUR][1000 genomes]
rs1486562	0.83[EUR][1000 genomes]
rs1486563	0.83[EUR][1000 genomes]
rs1552415	0.87[EUR][1000 genomes]
rs17546957	0.87[EUR][1000 genomes]
rs2036356	0.85[EUR][1000 genomes]
rs2651529	0.81[EUR][1000 genomes]
rs272779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs272780	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs272783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs272784	0.83[EUR][1000 genomes]
rs272785	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs272786	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs272787	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs272790	0.80[EUR][1000 genomes]
rs272793	0.80[EUR][1000 genomes]
rs272795	0.80[EUR][1000 genomes]
rs272797	0.80[EUR][1000 genomes]
rs272799	0.80[EUR][1000 genomes]
rs35786613	0.83[EUR][1000 genomes]
rs408396	0.80[EUR][1000 genomes]
rs4143784	0.83[EUR][1000 genomes]
rs4143785	0.83[EUR][1000 genomes]
rs4776136	0.81[EUR][1000 genomes]
rs7162663	0.85[EUR][1000 genomes]
rs8037429	0.85[EUR][1000 genomes]
rs972045	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53651600-53652400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:53652200-53654800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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