Variant report

Variant	rs12148777
Chromosome Location	chr15:53633930-53633931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53633620..53635255-chr15:53636615..53639104,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10152228	0.81[EUR][1000 genomes]
rs10152522	0.81[EUR][1000 genomes]
rs10152553	0.81[EUR][1000 genomes]
rs1027010	0.80[EUR][1000 genomes]
rs11070975	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856856	0.81[EUR][1000 genomes]
rs12439589	0.81[EUR][1000 genomes]
rs12442789	0.81[EUR][1000 genomes]
rs12911558	0.81[EUR][1000 genomes]
rs1466597	0.81[EUR][1000 genomes]
rs1466598	0.81[EUR][1000 genomes]
rs1466599	0.81[EUR][1000 genomes]
rs1466600	0.81[EUR][1000 genomes]
rs1466601	0.81[EUR][1000 genomes]
rs1486561	0.81[EUR][1000 genomes]
rs1552415	0.81[EUR][1000 genomes]
rs17546957	0.81[EUR][1000 genomes]
rs2035603	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2651529	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs272779	0.80[EUR][1000 genomes]
rs272780	0.80[EUR][1000 genomes]
rs272782	0.80[EUR][1000 genomes]
rs272783	0.80[EUR][1000 genomes]
rs272784	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs272785	0.83[EUR][1000 genomes]
rs272790	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs272791	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs272792	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs272793	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs272794	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs272795	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs272797	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs272798	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs272799	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35786613	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs408396	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4776129	0.84[EUR][1000 genomes]
rs4776136	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56227054	0.92[EUR][1000 genomes]
rs972045	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3333657	chr15:53633160-53635258	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53630800-53639000	Weak transcription	HepG2	liver

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