Variant report

Variant	rs2035603
Chromosome Location	chr15:53619713-53619714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR72-4	chr15:53618374-53622121	ucscGeneNc_uc002ade_1

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10152228	0.84[EUR][1000 genomes]
rs10152522	0.84[EUR][1000 genomes]
rs10152553	0.84[EUR][1000 genomes]
rs1027010	0.83[EUR][1000 genomes]
rs11070975	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11856856	0.84[EUR][1000 genomes]
rs12148777	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12439589	0.84[EUR][1000 genomes]
rs12442789	0.84[EUR][1000 genomes]
rs12911558	0.84[EUR][1000 genomes]
rs1466597	0.84[EUR][1000 genomes]
rs1466598	0.84[EUR][1000 genomes]
rs1466599	0.84[EUR][1000 genomes]
rs1466600	0.84[EUR][1000 genomes]
rs1466601	0.84[EUR][1000 genomes]
rs1486558	0.82[EUR][1000 genomes]
rs1486560	0.82[EUR][1000 genomes]
rs1486561	0.84[EUR][1000 genomes]
rs1486562	0.81[EUR][1000 genomes]
rs1486563	0.81[EUR][1000 genomes]
rs1552415	0.84[EUR][1000 genomes]
rs17546957	0.84[EUR][1000 genomes]
rs2651529	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs272784	0.91[EUR][1000 genomes]
rs272790	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs272791	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs272792	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs272793	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs272794	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs272795	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs272797	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs272798	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs272799	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35786613	0.91[EUR][1000 genomes]
rs408396	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4143784	0.81[EUR][1000 genomes]
rs4143785	0.82[EUR][1000 genomes]
rs4776129	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4776136	0.91[EUR][1000 genomes]
rs56227054	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162663	0.83[EUR][1000 genomes]
rs8037429	0.83[EUR][1000 genomes]
rs972045	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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