Variant report

Variant	rs1486563
Chromosome Location	chr15:53615553-53615554
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10152228	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10152522	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10152553	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1027010	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11856856	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12439589	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12439627	0.83[EUR][1000 genomes]
rs12442789	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12900646	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12900725	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12901476	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12904974	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12907341	0.81[EUR][1000 genomes]
rs12911558	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1386170	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1466597	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466598	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466599	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466600	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466601	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486558	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486559	0.85[EUR][1000 genomes]
rs1486560	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486561	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486562	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1552415	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552416	0.83[EUR][1000 genomes]
rs17546789	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17546957	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2035603	0.81[EUR][1000 genomes]
rs272779	0.83[EUR][1000 genomes]
rs272780	0.83[EUR][1000 genomes]
rs272782	0.83[EUR][1000 genomes]
rs272783	0.83[EUR][1000 genomes]
rs272785	0.86[EUR][1000 genomes]
rs272786	0.81[EUR][1000 genomes]
rs272787	0.81[EUR][1000 genomes]
rs4143784	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4143785	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4776131	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4776132	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4776133	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs55968066	0.82[EUR][1000 genomes]
rs56227054	0.84[EUR][1000 genomes]
rs7162663	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs750486	0.83[EUR][1000 genomes]
rs751175	0.83[EUR][1000 genomes]
rs8037429	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs972045	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53605400-53617400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:53609600-53615600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:53613800-53615800	Weak transcription	Brain Anterior Caudate	brain
4	chr15:53614600-53618200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr15:53615000-53615800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:53615200-53615800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:53615400-53615600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:53615400-53615800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr15:53615400-53615800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:53615400-53616000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr15:53615400-53616400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:53615400-53617600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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