Variant report

Variant	rs1552415
Chromosome Location	chr15:53621344-53621345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53621267..53623533-chr15:53625290..53626923,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR72-4	chr15:53618374-53622121	ucscGeneNc_uc002ade_1

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10152228	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10152522	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10152553	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1027010	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11070975	0.81[EUR][1000 genomes]
rs11070976	0.82[EUR][1000 genomes]
rs11856300	0.82[EUR][1000 genomes]
rs11856514	0.82[EUR][1000 genomes]
rs11856604	0.82[EUR][1000 genomes]
rs11856856	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12148777	0.81[EUR][1000 genomes]
rs12439589	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12439627	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12442789	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12592658	0.82[EUR][1000 genomes]
rs12900646	0.85[EUR][1000 genomes]
rs12900725	0.85[EUR][1000 genomes]
rs12901476	0.85[EUR][1000 genomes]
rs12904851	0.82[EUR][1000 genomes]
rs12904974	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12907341	0.83[EUR][1000 genomes]
rs12911558	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1386170	0.85[EUR][1000 genomes]
rs1466597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466599	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466600	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486556	0.82[EUR][1000 genomes]
rs1486557	0.82[EUR][1000 genomes]
rs1486558	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486559	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1486560	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486561	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486562	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486563	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501071	0.81[EUR][1000 genomes]
rs1552416	0.85[EUR][1000 genomes]
rs17546789	0.85[EUR][1000 genomes]
rs17546957	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2035603	0.84[EUR][1000 genomes]
rs2134002	0.82[EUR][1000 genomes]
rs272779	0.87[EUR][1000 genomes]
rs272780	0.87[EUR][1000 genomes]
rs272782	0.87[EUR][1000 genomes]
rs272783	0.87[EUR][1000 genomes]
rs272785	0.90[EUR][1000 genomes]
rs272786	0.85[EUR][1000 genomes]
rs272787	0.84[EUR][1000 genomes]
rs272790	0.81[EUR][1000 genomes]
rs272791	0.80[EUR][1000 genomes]
rs272793	0.81[EUR][1000 genomes]
rs272794	0.80[EUR][1000 genomes]
rs272795	0.81[EUR][1000 genomes]
rs272797	0.81[EUR][1000 genomes]
rs272798	0.80[EUR][1000 genomes]
rs272799	0.81[EUR][1000 genomes]
rs408396	0.81[EUR][1000 genomes]
rs4143784	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4143785	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4776131	0.85[EUR][1000 genomes]
rs4776132	0.85[EUR][1000 genomes]
rs4776133	0.82[EUR][1000 genomes]
rs55968066	0.84[EUR][1000 genomes]
rs56227054	0.82[EUR][1000 genomes]
rs7162663	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs750486	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs751175	0.85[EUR][1000 genomes]
rs8037429	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs972045	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links