Variant report

Variant	rs408396
Chromosome Location	chr15:53636546-53636547
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10152228	0.81[EUR][1000 genomes]
rs10152522	0.81[EUR][1000 genomes]
rs10152553	0.81[EUR][1000 genomes]
rs1027010	0.80[EUR][1000 genomes]
rs11070975	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11856856	0.81[EUR][1000 genomes]
rs12148777	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12439589	0.81[EUR][1000 genomes]
rs12442789	0.81[EUR][1000 genomes]
rs12911558	0.81[EUR][1000 genomes]
rs1466597	0.81[EUR][1000 genomes]
rs1466598	0.81[EUR][1000 genomes]
rs1466599	0.81[EUR][1000 genomes]
rs1466600	0.81[EUR][1000 genomes]
rs1466601	0.81[EUR][1000 genomes]
rs1486561	0.81[EUR][1000 genomes]
rs1552415	0.81[EUR][1000 genomes]
rs17546957	0.81[EUR][1000 genomes]
rs2035603	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2651529	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs272779	0.80[EUR][1000 genomes]
rs272780	0.80[EUR][1000 genomes]
rs272782	0.80[EUR][1000 genomes]
rs272783	0.80[EUR][1000 genomes]
rs272784	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs272785	0.83[EUR][1000 genomes]
rs272790	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs272791	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs272792	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs272793	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272794	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs272795	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272797	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs272798	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272799	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35786613	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4776129	0.84[EUR][1000 genomes]
rs4776136	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56227054	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs972045	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53630800-53639000	Weak transcription	HepG2	liver
2	chr15:53636400-53637000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr15:53636400-53637000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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