Variant report
| Variant | rs4776136 |
|---|---|
| Chromosome Location | chr15:53647549-53647550 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:53646817..53649529-chr15:53650079..53652645,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11070975 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12148777 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2035603 | 0.91[EUR][1000 genomes] |
| rs2651529 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs272779 | 0.81[EUR][1000 genomes] |
| rs272780 | 0.81[EUR][1000 genomes] |
| rs272782 | 0.81[EUR][1000 genomes] |
| rs272783 | 0.81[EUR][1000 genomes] |
| rs272784 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs272785 | 0.84[EUR][1000 genomes] |
| rs272790 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs272791 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs272792 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs272793 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs272794 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs272795 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs272797 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs272798 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs272799 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs35786613 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs408396 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4776129 | 0.80[EUR][1000 genomes] |
| rs56227054 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1037630 | chr15:53324645-53708925 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv833008 | chr15:53630471-53780618 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:53645800-53647600 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
