Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53646817..53649529-chr15:53650079..53652645,2	K562	blood:
2	chr1:226296765..226299191-chr15:53650573..53653066,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11070975	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12148777	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2035603	0.91[EUR][1000 genomes]
rs2651529	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs272779	0.83[EUR][1000 genomes]
rs272780	0.83[EUR][1000 genomes]
rs272782	0.83[EUR][1000 genomes]
rs272783	0.83[EUR][1000 genomes]
rs272784	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs272785	0.86[EUR][1000 genomes]
rs272786	0.81[EUR][1000 genomes]
rs272787	0.80[EUR][1000 genomes]
rs272790	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs272791	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs272792	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs272793	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs272794	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs272795	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs272797	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs272798	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs272799	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs408396	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4776129	0.81[EUR][1000 genomes]
rs4776136	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56227054	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53650800-53652200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:53651000-53652000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:53651200-53651600	Enhancers	Sigmoid Colon	Sigmoid Colon

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