Variant report

Variant	rs4776129
Chromosome Location	chr15:53603609-53603610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11070975	0.84[EUR][1000 genomes]
rs12148777	0.84[EUR][1000 genomes]
rs2035603	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2651529	0.82[EUR][1000 genomes]
rs272784	0.81[EUR][1000 genomes]
rs272790	0.84[EUR][1000 genomes]
rs272791	0.83[EUR][1000 genomes]
rs272792	0.80[EUR][1000 genomes]
rs272793	0.84[EUR][1000 genomes]
rs272794	0.84[EUR][1000 genomes]
rs272795	0.84[EUR][1000 genomes]
rs272797	0.84[EUR][1000 genomes]
rs272798	0.83[EUR][1000 genomes]
rs272799	0.84[EUR][1000 genomes]
rs35786613	0.81[EUR][1000 genomes]
rs408396	0.84[EUR][1000 genomes]
rs4776136	0.80[EUR][1000 genomes]
rs56227054	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv457143	chr15:53575652-53603688	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv569431	chr15:53575652-53603688	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53598200-53604600	Weak transcription	HepG2	liver
2	chr15:53598400-53604800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:53601000-53604400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:53601000-53604600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:53601000-53604800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:53601400-53607000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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