Variant report

Variant	rs11856604
Chromosome Location	chr15:53623872-53623873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:53364212..53364797-chr15:53623796..53624629,2	MCF-7	breast:
2	chr15:53623358..53624355-chr15:53747177..53747986,4	MCF-7	breast:
3	chr15:53623501..53624759-chr15:53729879..53730882,11	MCF-7	breast:
4	chr15:53623777..53624548-chr15:53729910..53730734,2	MCF-7	breast:
5	chr15:53623501..53624538-chr15:53729891..53730882,6	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10152228	0.82[EUR][1000 genomes]
rs10152522	0.82[EUR][1000 genomes]
rs10152553	0.82[EUR][1000 genomes]
rs1027010	0.81[EUR][1000 genomes]
rs11070976	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11856300	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11856514	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11856856	0.82[EUR][1000 genomes]
rs12439589	0.82[EUR][1000 genomes]
rs12439627	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12442789	0.82[EUR][1000 genomes]
rs12592658	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12900646	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12900725	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12901476	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12904851	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12907341	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12911558	0.82[EUR][1000 genomes]
rs12914787	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1386170	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1466597	0.82[EUR][1000 genomes]
rs1466598	0.82[EUR][1000 genomes]
rs1466599	0.82[EUR][1000 genomes]
rs1466600	0.82[EUR][1000 genomes]
rs1466601	0.82[EUR][1000 genomes]
rs1486556	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486557	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486559	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486561	0.82[EUR][1000 genomes]
rs1501071	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1552415	0.82[EUR][1000 genomes]
rs1552416	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17546789	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17546957	0.82[EUR][1000 genomes]
rs2036356	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2134002	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs272785	0.82[EUR][1000 genomes]
rs4776131	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4776132	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4776133	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55968066	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7162663	0.80[EUR][1000 genomes]
rs7173165	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs750485	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs750486	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs751175	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8037429	0.81[EUR][1000 genomes]
rs972045	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11856604	GNB5	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53623400-53624000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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