Variant report

Variant	rs7515671
Chromosome Location	chr1:197438984-197438985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197434277..197436893-chr1:197438363..197440563,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1022908	1.00[ASN][1000 genomes]
rs1024920	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10494753	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10494759	1.00[CHB][hapmap]
rs10754226	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12089070	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1362940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1421391	1.00[ASN][1000 genomes]
rs1421394	1.00[ASN][1000 genomes]
rs1592708	1.00[ASN][1000 genomes]
rs1862011	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1998433	1.00[ASN][1000 genomes]
rs2146484	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2160967	1.00[ASN][1000 genomes]
rs2160968	1.00[ASN][1000 genomes]
rs4244150	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4428919	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4915243	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6428402	1.00[ASN][1000 genomes]
rs6428403	1.00[ASN][1000 genomes]
rs6428406	1.00[ASN][1000 genomes]
rs6428408	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6678240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6678776	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73073604	1.00[ASN][1000 genomes]
rs942050	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197430800-197439000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:197432200-197439600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:197432800-197439000	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:197433000-197439000	Weak transcription	Brain Anterior Caudate	brain
5	chr1:197433200-197439000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:197433400-197439000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:197433600-197439000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:197433600-197439000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:197433600-197439000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:197433600-197439000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:197433600-197439200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:197434200-197440000	Weak transcription	Fetal Brain Female	brain
13	chr1:197435200-197440800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr1:197435400-197439000	Weak transcription	Brain Germinal Matrix	brain
15	chr1:197435600-197439000	Weak transcription	Fetal Brain Male	brain
16	chr1:197435600-197439800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:197435800-197440800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:197436600-197440600	Enhancers	Primary hematopoietic stem cells	blood
19	chr1:197437800-197441400	Weak transcription	Fetal Intestine Large	intestine
20	chr1:197438000-197440600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:197438600-197440400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr1:197438600-197440600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:197438600-197441000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr1:197438600-197441200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr1:197438600-197441800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr1:197438800-197439000	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr1:197438800-197439200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr1:197438800-197439600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr1:197438800-197439600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:197438800-197439800	Enhancers	H9 Cell Line	embryonic stem cell
31	chr1:197438800-197440400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr1:197438800-197441200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr1:197438800-197441400	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr1:197438800-197442000	Enhancers	Ovary	ovary

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