Variant report

Variant	rs1998433
Chromosome Location	chr1:197449414-197449415
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197445141..197448149-chr1:197448759..197452870,4	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1022908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1024920	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1033826	1.00[AMR][1000 genomes]
rs10494753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10494759	1.00[CHB][hapmap]
rs10754226	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10801606	1.00[AMR][1000 genomes]
rs10922235	0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089070	1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1362940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1421390	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1421391	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1421394	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1570412	1.00[AMR][1000 genomes]
rs1570413	1.00[AMR][1000 genomes]
rs1592707	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1592708	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16841553	0.82[YRI][hapmap]
rs1862011	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1923758	1.00[AMR][1000 genomes]
rs1951697	0.85[AMR][1000 genomes]
rs2146484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs2146485	1.00[AMR][1000 genomes]
rs2160967	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2160968	1.00[ASN][1000 genomes]
rs2181373	1.00[AMR][1000 genomes]
rs2359119	1.00[AMR][1000 genomes]
rs2821099	1.00[AMR][1000 genomes]
rs3888104	1.00[AMR][1000 genomes]
rs3902057	1.00[AMR][1000 genomes]
rs4244150	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs4335404	1.00[AMR][1000 genomes]
rs4428919	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4915243	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4989560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6428401	0.87[AMR][1000 genomes]
rs6428402	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6428403	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6428405	1.00[AMR][1000 genomes]
rs6428406	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6428408	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6656674	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6664766	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670147	0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6678240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6678776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs6684593	1.00[AMR][1000 genomes]
rs6686241	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6689739	1.00[AMR][1000 genomes]
rs6690015	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6691940	1.00[AMR][1000 genomes]
rs6694254	0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73073604	1.00[ASN][1000 genomes]
rs7514167	1.00[AMR][1000 genomes]
rs7515671	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7515749	1.00[AMR][1000 genomes]
rs7525737	0.87[AMR][1000 genomes]
rs7530158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs927511	1.00[AMR][1000 genomes]
rs942050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs980370	1.00[AMR][1000 genomes]
rs980371	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197440800-197456200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:197441200-197454400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:197441200-197456000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:197441400-197456400	Weak transcription	Brain Germinal Matrix	brain
5	chr1:197446400-197450600	Weak transcription	Stomach Mucosa	stomach
6	chr1:197447000-197449600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:197447000-197454600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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