Variant report

Variant	rs1951697
Chromosome Location	chr1:197395661-197395662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:197394451..197396257-chr1:197403250..197404864,2	K562	blood:
2	chr1:197393861..197396014-chr1:197399559..197401986,3	K562	blood:
3	chr1:197385261..197387512-chr1:197393443..197395801,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1022908	0.85[AMR][1000 genomes]
rs1033826	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10801606	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10922235	0.85[AMR][1000 genomes]
rs1421390	0.85[AMR][1000 genomes]
rs1421391	0.85[AMR][1000 genomes]
rs1421394	0.85[AMR][1000 genomes]
rs1570412	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1570413	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1592707	0.85[AMR][1000 genomes]
rs1592708	0.85[AMR][1000 genomes]
rs1923758	0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1923760	1.00[YRI][hapmap]
rs1923761	0.96[AFR][1000 genomes]
rs1923763	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs1998433	0.85[AMR][1000 genomes]
rs2146484	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs2146485	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2160967	0.85[AMR][1000 genomes]
rs2181373	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2256222	0.93[YRI][hapmap]
rs2359119	0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2476016	0.92[AFR][1000 genomes]
rs2476017	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2476018	0.93[YRI][hapmap]
rs2476022	0.96[AFR][1000 genomes]
rs2476024	0.85[AFR][1000 genomes]
rs2494272	0.96[AFR][1000 genomes]
rs2759660	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2821099	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2821100	0.96[AFR][1000 genomes]
rs2821105	0.92[YRI][hapmap]
rs3888104	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3902057	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4244150	0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs4335404	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4428919	0.81[YRI][hapmap]
rs4989560	0.85[AMR][1000 genomes]
rs6428401	0.82[AFR][1000 genomes]
rs6428402	0.85[AMR][1000 genomes]
rs6428405	0.85[AMR][1000 genomes]
rs6428406	0.85[AMR][1000 genomes]
rs6656674	0.85[AMR][1000 genomes]
rs6664766	0.85[AMR][1000 genomes]
rs6670147	0.85[AMR][1000 genomes]
rs6684593	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6686241	0.85[AMR][1000 genomes]
rs6689739	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6691940	0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6694254	0.85[AMR][1000 genomes]
rs7514167	0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7515749	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7525737	0.81[YRI][hapmap]
rs7530158	0.85[AMR][1000 genomes]
rs927511	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs942050	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs9427667	0.89[AFR][1000 genomes]
rs980370	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs980371	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197388800-197407000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:197388800-197407000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:197389600-197405800	Weak transcription	Brain Germinal Matrix	brain
4	chr1:197391600-197398400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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