Variant report

Variant	rs2476024
Chromosome Location	chr1:197356538-197356539
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1033826	0.85[AFR][1000 genomes]
rs1570412	0.85[AFR][1000 genomes]
rs1570413	0.85[AFR][1000 genomes]
rs1923758	0.85[AFR][1000 genomes]
rs1923761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1923763	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1951697	0.85[AFR][1000 genomes]
rs2146485	0.85[AFR][1000 genomes]
rs2181373	0.89[AFR][1000 genomes]
rs2256222	0.87[AFR][1000 genomes]
rs2476016	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2476017	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2476022	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2494272	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759660	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2821099	0.89[AFR][1000 genomes]
rs2821100	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2821105	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3888104	0.87[AFR][1000 genomes]
rs3902057	0.87[AFR][1000 genomes]
rs4335404	0.85[AFR][1000 genomes]
rs6684593	0.85[AFR][1000 genomes]
rs7515749	0.81[AFR][1000 genomes]
rs927511	0.85[AFR][1000 genomes]
rs9427667	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs980370	0.85[AFR][1000 genomes]
rs980371	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197354400-197366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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