Variant report

Variant	rs2476016
Chromosome Location	chr1:197358354-197358355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1033826	0.92[AFR][1000 genomes]
rs10801606	0.83[AFR][1000 genomes]
rs1570412	0.92[AFR][1000 genomes]
rs1570413	0.92[AFR][1000 genomes]
rs1923758	0.92[AFR][1000 genomes]
rs1923761	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1923763	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1951697	0.92[AFR][1000 genomes]
rs2146485	0.92[AFR][1000 genomes]
rs2181373	0.96[AFR][1000 genomes]
rs2256222	0.83[AFR][1000 genomes]
rs2359119	0.83[AFR][1000 genomes]
rs2476017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2476022	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2476024	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2494272	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759660	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2821099	0.96[AFR][1000 genomes]
rs2821100	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2821105	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3888104	0.94[AFR][1000 genomes]
rs3902057	0.94[AFR][1000 genomes]
rs4335404	0.92[AFR][1000 genomes]
rs6684593	0.92[AFR][1000 genomes]
rs6689739	0.87[AFR][1000 genomes]
rs6691940	0.83[AFR][1000 genomes]
rs7514167	0.83[AFR][1000 genomes]
rs7515749	0.89[AFR][1000 genomes]
rs927511	0.92[AFR][1000 genomes]
rs942050	0.81[AFR][1000 genomes]
rs9427667	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs980370	0.92[AFR][1000 genomes]
rs980371	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197354400-197366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:197357400-197358400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links