Variant report

Variant	rs2821105
Chromosome Location	chr1:197344052-197344053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197339732..197342196-chr1:197342853..197345482,2	MCF-7	breast:
2	chr1:197335577..197340315-chr1:197341690..197345883,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1033826	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap]
rs1570412	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap]
rs1570413	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap]
rs1764630	1.00[MEX][hapmap]
rs1923758	0.88[YRI][hapmap]
rs1923760	0.92[YRI][hapmap]
rs1923761	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1923763	0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1951697	0.92[YRI][hapmap]
rs2146485	0.92[YRI][hapmap]
rs2181373	0.80[AFR][1000 genomes]
rs2256222	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2359119	0.81[YRI][hapmap]
rs2476016	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2476017	0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2476018	1.00[YRI][hapmap]
rs2476022	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2476024	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2494272	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2759660	0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786099	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2821099	0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs2821100	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2821119	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs2821124	0.81[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap]
rs3888104	0.92[YRI][hapmap]
rs3902057	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.92[YRI][hapmap]
rs4244150	0.81[LWK][hapmap];1.00[MEX][hapmap]
rs4335404	0.92[YRI][hapmap]
rs516640	1.00[MEX][hapmap]
rs6428392	1.00[MEX][hapmap]
rs6684593	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.92[YRI][hapmap]
rs6691940	0.89[YRI][hapmap]
rs7514167	0.92[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs7515749	0.92[YRI][hapmap]
rs942050	0.81[LWK][hapmap];1.00[MEX][hapmap]
rs9427667	0.85[AMR][1000 genomes]
rs980370	0.91[YRI][hapmap]
rs980371	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197324000-197347000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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