Variant report

Variant	rs2821124
Chromosome Location	chr1:197320698-197320699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1033826	1.00[MEX][hapmap]
rs1538037	0.93[ASW][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1570412	1.00[MEX][hapmap]
rs1570413	1.00[MEX][hapmap]
rs1764630	1.00[MEX][hapmap]
rs2821105	0.81[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap]
rs2821119	0.88[YRI][hapmap]
rs2821123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3902057	1.00[MEX][hapmap]
rs4244150	1.00[MEX][hapmap]
rs516640	1.00[MEX][hapmap]
rs6428392	1.00[MEX][hapmap]
rs6684593	1.00[MEX][hapmap]
rs7514167	1.00[MEX][hapmap]
rs942050	1.00[MEX][hapmap]
rs980371	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197299000-197323400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:197313800-197324000	Weak transcription	HSMMtube	muscle
3	chr1:197316200-197329200	Weak transcription	Brain Substantia Nigra	brain
4	chr1:197320600-197321200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:197320600-197321200	Enhancers	Brain Anterior Caudate	brain
6	chr1:197320600-197321600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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