Variant report

Variant	rs6428392
Chromosome Location	chr1:197180154-197180155
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1764627	1.00[AMR][1000 genomes]
rs1764630	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2821105	1.00[MEX][hapmap]
rs2821124	1.00[MEX][hapmap]
rs473663	1.00[AMR][1000 genomes]
rs476505	1.00[YRI][hapmap]
rs516640	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs613010	1.00[AMR][1000 genomes]
rs6680205	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv873071	chr1:197079671-197187605	Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv873072	chr1:197079671-197221248	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv873073	chr1:197107074-197221248	Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197171600-197181800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:197171600-197181800	Weak transcription	Ovary	ovary
3	chr1:197171800-197181400	Weak transcription	Fetal Heart	heart
4	chr1:197172200-197181400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:197172600-197194200	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:197176800-197181400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:197177800-197180200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:197177800-197183200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr1:197178600-197180400	Weak transcription	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links